Bio::EnsEMBL DnaPepAlignFeature
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Summary
Bio::EnsEMBL::DnaPepAlignFeature - Ensembl specific dna-pep pairwise
alignment feature
Package variables
No package variables defined.
Included modules
Bio::EnsEMBL::BaseAlignFeature
Inherit
Bio::EnsEMBL::BaseAlignFeature
Synopsis
  See BaseAlignFeature
Description
No description!
Methods
_hit_unitDescriptionCode
_query_unitDescriptionCode
new_fastDescriptionCode
Methods description
_hit_unitcode    nextTop
  Arg [1]    : none
  Example    : none
  Description: PRIVATE implementation of abstract superclass method.  Returns
               1 as the 'unit' used for the hit sequence. 
  Returntype : int
  Exceptions : none
  Caller     : Bio::EnsEMBL::BaseAlignFeature
  Status     : Stable
_query_unitcodeprevnextTop
  Arg [1]    : none
  Example    : none
  Description: PRIVATE implementation of abstract superclass method.  Returns
               3 as the 'unit' used for the query sequence. 
  Returntype : int
  Exceptions : none
  Caller     : Bio::EnsEMBL::BaseAlignFeature
  Status     : Stable
new_fastcodeprevnextTop
  Arg [1]    : hashref $hashref
               A hashref which will be blessed into a PepDnaAlignFeature. 
  Example    : none
  Description: This allows for very fast object creation when a large number 
               of DnaPepAlignFeatures needs to be created.  This is a bit of 
               a hack but necessary when thousands of features need to be
               generated within a couple of seconds for web display. It is
               not recommended that this method be called unless you know what
               you are doing.  It requires knowledge of the internals of this
               class and its superclasses.  
  Returntype : Bio::EnsEMBL::DnaPepAlignFeature
  Exceptions : none
  Caller     : Bio::EnsEMBL::DBSQL::ProteinAlignFeatureAdaptor
  Status     : Stable
Methods code
_hit_unitdescriptionprevnextTop
sub _hit_unit {
  return 1;
}
_query_unitdescriptionprevnextTop
sub _query_unit {
  return 3;
}




1;
}
new_fastdescriptionprevnextTop
sub new_fast {
  my ($class, $hashref) = @_;

  return bless $hashref, $class;
}
General documentation
LICENSETop
  Copyright (c) 1999-2009 The European Bioinformatics Institute and
  Genome Research Limited.  All rights reserved.

  This software is distributed under a modified Apache license.
  For license details, please see

    /info/about/code_licence.html
CONTACTTop
  Please email comments or questions to the public Ensembl
  developers list at <ensembl-dev@ebi.ac.uk>.

  Questions may also be sent to the Ensembl help desk at
  <helpdesk@ensembl.org>.