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Overview
Information_panel
Internal_call
Method
Unknown
- _init
- content
Methods
- _pop_url
Internal_call.
| Arg 1 | Proxy object |
| Arg 2 | Population name (to be displayed) |
| Arg 3 | dbSNP population ID (variable to be linked to) |
| Description | makes pop_name into a link Returns HTML string of link to population in dbSNP |
| Example | _pop_url($pop_name, $pop_dbSNPID); |
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focus
Information_panel.
| Description | adds pair of values (type of focus e.g gene or snp and the ID) to panel if the paramater "gene" or "snp" is defined |
| Purpose | outputs focus of page e.g.. gene, SNP (rs5050)or slice |
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population_info
Information_panel.
| Description | Returns information about the population. Calls helper function print_pop_info to get population data (name, size, description, whether the SNP is tagged) |
| Purpose | outputs name, size, description of population and super/sub population info if exists |
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prediction_method
Information_panel.
| Description | Adds text information about the prediction method |
| Purpose | standard blurb about calculation of LD |
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print_pop_info
Internal_call.
| Arg1 | population object |
| Arg2 | label (e.g. "Super-Population" or "Sub-Population") |
| Description | Returns information about the population: name, size, description and whether it is a tagged SNP Returns HTML string with population data |
| Example | print_pop_info($super_pop, "Super-Population"). |
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tagged_snp
| Arg1 | object |
| Arg2 | population name (string) |
| Description | Gets the EnsEMBL::Web::Object::SNP object off the proxy object and checks if SNP is tagged in the current population. Returns 0 if no SNP. |
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