EnsEMBL::Web::Tools::PluginLocator

Methods

DESTROY
Desctructor.
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EnsEMBL::Web::Tools::PluginLocator::DESTROY


_format_error
Format an error message by wrapping text to 120 columns
Inherited from EnsEMBL::Web::Root
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EnsEMBL::Web::Root::_format_error


add_child
Adds a child to the children array.
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EnsEMBL::Web::Tools::PluginLocator::add_child


add_result
Accepts a key value pair, and stores the value in the results hash against the key.
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EnsEMBL::Web::Tools::PluginLocator::add_result


call
Calls one or more methods on the classes found by include. The results are stored in the results array.
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EnsEMBL::Web::Tools::PluginLocator::call


children
Accessor.
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EnsEMBL::Web::Tools::PluginLocator::children


create_all
Creates an instance of each class found by include, and stores references to the objects in the results array.
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EnsEMBL::Web::Tools::PluginLocator::create_all


de_romanize
Converts a number from roman (IV...) format to number...
Inherited from EnsEMBL::Web::Root
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EnsEMBL::Web::Root::de_romanize


dynamic_use
Equivalent of USE - but used at runtime
Inherited from EnsEMBL::Web::Root
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EnsEMBL::Web::Root::dynamic_use


dynamic_use_failure
Return error message cached if use previously failed!
Inherited from EnsEMBL::Web::Root
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EnsEMBL::Web::Root::dynamic_use_failure


evaluate_bp
Reverse of round BP - takes a value with a K/M/G at the end and converts to integer value...
Inherited from EnsEMBL::Web::Root
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EnsEMBL::Web::Root::evaluate_bp


include
Dynamically includes found modules in the locations specified by locations, ending in a specified (optional) suffix. Any previously loaded modules are not loaded again. include should check for warnings if it's important that a particular module is loaded.Returns true even if modules failed to load. Anything calling
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EnsEMBL::Web::Tools::PluginLocator::include


is_valid_module_name
returns true if valid module name...
Inherited from EnsEMBL::Web::Root
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EnsEMBL::Web::Root::is_valid_module_name


locations
Accessor.
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EnsEMBL::Web::Tools::PluginLocator::locations


make_directory
Creates a writeable directory - making sure all parents exist!
Inherited from EnsEMBL::Web::Root
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EnsEMBL::Web::Root::make_directory


method
Accessor.
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EnsEMBL::Web::Tools::PluginLocator::method


neat_sr_name
Returns seq-region name formatted neatly...
Inherited from EnsEMBL::Web::Root
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EnsEMBL::Web::Root::neat_sr_name


new
Constructor. Inside-out class for finding and calling plugin modules.
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EnsEMBL::Web::Tools::PluginLocator::new


new
Constructor. Constructs the class - as its a base class contains nothing.!
Inherited from EnsEMBL::Web::Root
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EnsEMBL::Web::Root::new


not_allowed
Loops through array of filters and returns the first one that fails
Inherited from EnsEMBL::Web::Root
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EnsEMBL::Web::Root::not_allowed


parameters
Accessor.
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EnsEMBL::Web::Tools::PluginLocator::parameters


pretty_date
Converts a MySQL datetime field into something human-readable
Inherited from EnsEMBL::Web::Root
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EnsEMBL::Web::Root::pretty_date


result_for
Returns a result from the result array for a particular class. If call has been called, this is the result of whatever methods were called against the class. If create_all has been called most recently, it will return the object reference for that class.
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EnsEMBL::Web::Tools::PluginLocator::result_for


results
Accessor.
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EnsEMBL::Web::Tools::PluginLocator::results


round_bp
Returns #bp formatted neatly as either m/k
Inherited from EnsEMBL::Web::Root
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EnsEMBL::Web::Root::round_bp


seq_region_sort
Used to sort chromosomes into a sensible order!
Inherited from EnsEMBL::Web::Root
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EnsEMBL::Web::Root::seq_region_sort


suffix
Accessor.
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EnsEMBL::Web::Tools::PluginLocator::suffix


temp_file_create
Creates a temporary file name and makes sure its parent directory exists
Inherited from EnsEMBL::Web::Root
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EnsEMBL::Web::Root::temp_file_create


temp_file_name
Creates a random filename
Inherited from EnsEMBL::Web::Root
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EnsEMBL::Web::Root::temp_file_name


templatize
Takes a string, and a template pattern and returns the string with "/" from the template inserted...
Inherited from EnsEMBL::Web::Root
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EnsEMBL::Web::Root::templatize


thousandify
Retuns comma separated version of number...
Inherited from EnsEMBL::Web::Root
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EnsEMBL::Web::Root::thousandify


ticket
Returns a random ticket string
Inherited from EnsEMBL::Web::Root
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EnsEMBL::Web::Root::ticket


url
Assembles a valid URL, adding the site's base URL and CGI-escaping any parametersreturns a URL string
Inherited from EnsEMBL::Web::Root
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EnsEMBL::Web::Root::url


warnings
Accessor.
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EnsEMBL::Web::Tools::PluginLocator::warnings