TOC for ensembl-compara::modules::Bio::EnsEMBL::Compara::Production::GenomicAlignBlock
AlignmentChainsBio::EnsEMBL::Compara::Production::GenomicAlignBlock::AlignmentChains
AlignmentNetsBio::EnsEMBL::Compara::Production::GenomicAlign::AlignmentNets
AlignmentProcessingBio::EnsEMBL::Compara::Production::GenomicAlignBlock::AlignmentProcessing
BlastZBio::EnsEMBL::Compara::RunnableDB::BlastZ
BlatBio::EnsEMBL::Compara::RunnableDB::Blat
ChunkAndGroupDnaBio::EnsEMBL::Compara::Production::GenomicAlignBlock::ChunkAndGroupDna
CreateAlignmentChainsJobsBio::EnsEMBL::Compara::RunnableDB::CreateAlignmentChainsJobs
CreateAlignmentNetsJobsBio::EnsEMBL::Compara::RunnableDB::CreateAlignmentNetsJobs
CreateFilterDuplicatesJobsBio::EnsEMBL::Compara::Production::GenomicAlignBlock::CreateFilterDuplicatesJobs
CreateLowCoverageJobsBio::EnsEMBL::Compara::RunnableDB::CreateLowCoverageAlignmentJobs
CreatePairAlignerJobsBio::EnsEMBL::Compara::RunnableDB::CreatePairAlignerJobs
CreateRulesBio::EnsEMBL::Compara::RunnableDB::CreateRules
CreateSimpleNetsJobsBio::EnsEMBL::Compara::RunnableDB::CreateSimpleNetsJobs
DumpDnaCollectionBio::EnsEMBL::Compara::Production::GenomicAlignBlock::DumpDnaCollection
DumpLargeNibForChainsBio::EnsEMBL::Compara::Production::GenomicAlignBlock::DumpLargeNibForChains
FilterDuplicatesBio::EnsEMBL::Compara::Production::GenomicAlignBlock::FilterDuplicates
FilterStackBio::EnsEMBL::Compara::Production::GenomicAlignBlock::FilterStack
GerpBio::EnsEMBL::Compara::Production::GenomicAlignBlock::Gerp
ImportAlignmentBio::EnsEMBL::Compara::Production::GenomicAlignBlock::ImportAlignment
LaganBio::EnsEMBL::Compara::Production::GenomicAlignBlock::Lagan
LowCoverageGenomeAlignmentBio::EnsEMBL::Compara::Production::GenomicAlignBlock::LowCoverageGenomeAlignment
MavidBio::EnsEMBL::Compara::Production::GenomicAlignBlock::Mavid
MercatorBio::EnsEMBL::Compara::Production::GenomicAlignBlock::Mercator
MlaganBio::EnsEMBL::Compara::Production::GenomicAlignBlock::Mlagan
OrtheusBio::EnsEMBL::Compara::Production::GenomicAlignBlock::Ortheus
PairAlignerBio::EnsEMBL::Compara::Production::GenomicAlignBlock::PairAligner
PecanBio::EnsEMBL::Compara::Production::GenomicAlignBlock::Pecan
PhastConsBio::EnsEMBL::Compara::Production::GenomicAlignBlock::PhastCons
SimpleNetsBio::EnsEMBL::Compara::Production::GenomicAlign::AlignmentSimple
UpdateMaxAlignmentLengthBio::EnsEMBL::Compara::Production::GenomicAlignBlock::FilterDuplicates