None available.
sub _columns
{ my $self = shift;
return ( 't.taxonomy_id', 't.entry_id',
't.ncbi_tax_id'); } |
sub _objs_from_sth
{ my ($self, $sth) = @_;
my @out;
my ( $tax_id, $entry_id, $ncbi_tax_id );
$sth->bind_columns(\$ tax_id,\$ entry_id,\$ ncbi_tax_id );
while($sth->fetch()) {
push @out, Bio::EnsEMBL::ExternalData::Mole::Taxonomy->new(
-dbID => $tax_id,
-entry_id => $entry_id,
-adaptor => $self,
-ncbi_tax_id => $ncbi_tax_id,
);
}
return\@ out;
}
1; } |
sub _tables
{ my $self = shift;
return (['taxonomy' , 't']); } |
sub fetch_by_Entry
{ my $self = shift;
my $entry = shift;
my $sth = $self->prepare(
"SELECT t.taxonomy_id ".
"FROM taxonomy t ".
"WHERE t.entry_id = ?");
$sth->bind_param(1, $entry->dbID, SQL_INTEGER);
$sth->execute();
my $id = $sth->fetchrow();
$sth->finish();
my $taxonomy_object = $self->fetch_by_dbID($id);
return $taxonomy_object; } |
sub fetch_by_dbID
{ my $self = shift;
my $id = shift;
my $constraint = "t.taxonomy_id = '$id'";
my ($accession_obj) = @{ $self->generic_fetch($constraint) };
return $accession_obj; } |
sub fetch_by_entry_id
{ my ($self, $entry_id) = @_;
my $constraint = "t.entry_id = '$entry_id'";
my ($taxonomy_obj) = @{ $self->generic_fetch($constraint) };
return $taxonomy_obj; } |
sub fetch_by_ncbi_tax_id
{ my ($self, $taxid) = @_;
my $constraint = "t.ncbi_tax_id = '$taxid'";
my ($ncbi_tax_id_obj) = @{ $self->generic_fetch($constraint) };
return $ncbi_tax_id_obj; } |