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Synopsis

No synopsis!

Description

The HitDescription object provides extra
information about database matches that is not
provided by the AlignFeature objects to which it
is attached.

Methods

Methods description

None available.

Methods code

sub db_name {

    my( $self, $db_name ) = @_;
    
    if ($db_name) {
        $self->{'_db_name'} = $db_name;
    }
    return $self->{'_db_name'};
}

1;

__END__

}

sub description {

    my( $self, $description ) = @_;
    
    if ($description) {
        $self->{'_description'} = $description;
    }
    return $self->{'_description'};

}

sub hit_length {

    my( $self, $hit_length ) = @_;
    
    if ($hit_length) {
        $self->{'_hit_length'} = $hit_length;
    }
    return $self->{'_hit_length'};

}

sub new {

    return bless {}, shift;

}

sub taxon_id {

    my( $self, $taxon_id ) = @_;
    
    if ($taxon_id) {
        $self->{'_taxon_id'} = $taxon_id;
    }
    return $self->{'_taxon_id'};

}

General documentation

    The length of the entire hit sequence - not just
the region matched.
    A one line description of the sequence.
    The numeric NCBI taxonomy database ID for the
node (which is usually species).
    The database which the hit belongs to.

James Gilbert email jgrg@sanger.ac.uk - original implementation

Mustapha Larbaoui email ml6@sanger.ac.uk - new pipeline