Inherits from:
No subclasses
Overview
Accessor
- plugin_locator (EnsEMBL::Web::Document::Page)
Constructor
- new (EnsEMBL::Web::Root)
Method
- _format_error (EnsEMBL::Web::Root)
- ajax_redirect (EnsEMBL::Web::Document::Page)
- de_romanize (EnsEMBL::Web::Root)
- dynamic_use (EnsEMBL::Web::Root)
- dynamic_use_failure (EnsEMBL::Web::Root)
- evaluate_bp (EnsEMBL::Web::Root)
- is_valid_module_name (EnsEMBL::Web::Root)
- make_directory (EnsEMBL::Web::Root)
- neat_sr_name (EnsEMBL::Web::Root)
- not_allowed (EnsEMBL::Web::Root)
- pretty_date (EnsEMBL::Web::Root)
- round_bp (EnsEMBL::Web::Root)
- seq_region_sort (EnsEMBL::Web::Root)
- temp_file_create (EnsEMBL::Web::Root)
- temp_file_name (EnsEMBL::Web::Root)
- templatize (EnsEMBL::Web::Root)
- thousandify (EnsEMBL::Web::Root)
- ticket (EnsEMBL::Web::Root)
- url (EnsEMBL::Web::Root)
Unknown
- _basic_HTML (EnsEMBL::Web::Document::Common)
- _common_HTML (EnsEMBL::Web::Document::Common)
- _init (EnsEMBL::Web::Document::Page)
- _initialize_DAS
- _initialize_Excel
- _initialize_HTML
- _initialize_Text
- _initialize_TextGz
- _initialize_XML
- _parse_referer (EnsEMBL::Web::Root)
- _render_close_body_tag (EnsEMBL::Web::Document::Page)
- _render_head_and_body_tag (EnsEMBL::Web::Document::Page)
- _script_HTML (EnsEMBL::Web::Document::Common)
- add_body_attr (EnsEMBL::Web::Document::Page)
- add_body_element (EnsEMBL::Web::Document::Page)
- add_body_element_after (EnsEMBL::Web::Document::Page)
- add_body_element_before (EnsEMBL::Web::Document::Page)
- add_body_element_first (EnsEMBL::Web::Document::Page)
- add_body_element_last (EnsEMBL::Web::Document::Page)
- add_body_elements (EnsEMBL::Web::Document::Page)
- add_head_element_after (EnsEMBL::Web::Document::Page)
- add_head_element_before (EnsEMBL::Web::Document::Page)
- add_head_element_first (EnsEMBL::Web::Document::Page)
- add_head_element_last (EnsEMBL::Web::Document::Page)
- add_head_elements (EnsEMBL::Web::Document::Page)
- body_elements (EnsEMBL::Web::Document::Page)
- body_order (EnsEMBL::Web::Document::Page)
- call_child_functions (EnsEMBL::Web::Document::Page)
- clear_body_attr (EnsEMBL::Web::Document::Page)
- doc_type (EnsEMBL::Web::Document::Page)
- filters (EnsEMBL::Web::Root)
- head_elements (EnsEMBL::Web::Document::Page)
- head_order (EnsEMBL::Web::Document::Page)
- help_feedback (EnsEMBL::Web::Root)
- html_line (EnsEMBL::Web::Document::Page)
- include_navigation (EnsEMBL::Web::Document::Page)
- is_available (EnsEMBL::Web::Root)
- new (EnsEMBL::Web::Document::Page)
- print (EnsEMBL::Web::Document::Page)
- printf (EnsEMBL::Web::Document::Page)
- remove_body_element (EnsEMBL::Web::Document::Page)
- remove_head_element (EnsEMBL::Web::Document::Page)
- render (EnsEMBL::Web::Document::Page)
- render_DAS (EnsEMBL::Web::Document::Page)
- render_Excel (EnsEMBL::Web::Document::Page)
- render_Text (EnsEMBL::Web::Document::Page)
- render_TextGz (EnsEMBL::Web::Document::Page)
- render_XML (EnsEMBL::Web::Document::Page)
- render_end (EnsEMBL::Web::Document::Page)
- render_start (EnsEMBL::Web::Document::Page)
- renderer (EnsEMBL::Web::Document::Page)
- replace_body_element (EnsEMBL::Web::Document::Page)
- replace_head_element (EnsEMBL::Web::Document::Page)
- script_name (EnsEMBL::Web::Document::Common)
- set_doc_type (EnsEMBL::Web::Document::Page)
- set_title
- set_title (EnsEMBL::Web::Document::Common)
- species_defs (EnsEMBL::Web::Document::Page)
- timer_push (EnsEMBL::Web::Document::Page)
- wrap_ad (EnsEMBL::Web::Document::Common)
Methods
- _format_error
Format an error message by wrapping text to 120 columns
Inherited from EnsEMBL::Web::Root
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ajax_redirect
AJAX-friendly redirect, for use in control panel
Inherited from EnsEMBL::Web::Document::Page
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de_romanize
Converts a number from roman (IV...) format to number...
Inherited from EnsEMBL::Web::Root
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dynamic_use
Equivalent of USE - but used at runtime
Inherited from EnsEMBL::Web::Root
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dynamic_use_failure
Return error message cached if use previously failed!
Inherited from EnsEMBL::Web::Root
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evaluate_bp
Reverse of round BP - takes a value with a K/M/G at the end and converts to integer value...
Inherited from EnsEMBL::Web::Root
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is_valid_module_name
returns true if valid module name...
Inherited from EnsEMBL::Web::Root
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make_directory
Creates a writeable directory - making sure all parents exist!
Inherited from EnsEMBL::Web::Root
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neat_sr_name
Returns seq-region name formatted neatly...
Inherited from EnsEMBL::Web::Root
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new
Constructor. Constructs the class - as its a base class contains nothing.!
Inherited from EnsEMBL::Web::Root
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not_allowed
Loops through array of filters and returns the first one that fails
Inherited from EnsEMBL::Web::Root
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plugin_locator
Accessor.
Inherited from EnsEMBL::Web::Document::Page
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pretty_date
Converts a MySQL datetime field into something human-readable
Inherited from EnsEMBL::Web::Root
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round_bp
Returns #bp formatted neatly as either m/k
Inherited from EnsEMBL::Web::Root
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seq_region_sort
Used to sort chromosomes into a sensible order!
Inherited from EnsEMBL::Web::Root
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temp_file_create
Creates a temporary file name and makes sure its parent directory exists
Inherited from EnsEMBL::Web::Root
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temp_file_name
Creates a random filename
Inherited from EnsEMBL::Web::Root
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templatize
Takes a string, and a template pattern and returns the string with "/" from the template inserted...
Inherited from EnsEMBL::Web::Root
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thousandify
Retuns comma separated version of number...
Inherited from EnsEMBL::Web::Root
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ticket
Returns a random ticket string
Inherited from EnsEMBL::Web::Root
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url
Assembles a valid URL, adding the site's base URL and CGI-escaping any parametersreturns a URL string
Inherited from EnsEMBL::Web::Root
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