EnsEMBL::Web::Object

Methods

EnsemblObject
Deprecated. Sets/gets the underlying Ensembl object wrapped by the web object
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EnsEMBL::Web::Object::EnsemblObject


Obj
Accessor. Gets the underlying Ensembl object wrapped by the web object
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EnsEMBL::Web::Object::Obj


URL
(%params) Returns an absolute link to another script. %params hash is used as the parameters for the link. Note keys species and script are handled differently - as these are not passed as parameters but set the species and script name respectively in the URL
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EnsEMBL::Web::Object::URL


_URL
Returns either a full link or absolute link to a script
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EnsEMBL::Web::Object::_URL


alternative_object_from_factory
There may be occassions when a script needs to work with features of more than one type. in this case we create a new EnsEMBL::Web::Proxy::Factory object for the alternative data type and retrieves the data (based on the standard URL parameters for the new factory) attach it to the universal datahash __data
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EnsEMBL::Web::Object::alternative_object_from_factory


command
Command object attached to proxy object
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EnsEMBL::Web::Object::command


dataobj
Deprecated. Accessor. Gets the underlying Ensembl object wrapped by the web object
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EnsEMBL::Web::Object::dataobj


full_URL
Returns a full (http://...) link to another script. Wrapper around _URL function
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EnsEMBL::Web::Object::full_URL


highlights
Accessor. The highlights array is passed between web-requests to highlight selected items (e.g. Gene around which contigview had been rendered. If any data is passed this is stored in the highlights array and an arrayref of (unique) elements is returned.
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EnsEMBL::Web::Object::highlights


highlights_string
Returns the highlights area as a | separated list for passing in URLs.
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EnsEMBL::Web::Object::highlights_string


interface
Data interface attached to object
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EnsEMBL::Web::Object::interface


location_URL
Parameters: $feature, $script, $contextReturns a link to a contigview style display, based on feature, with context
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EnsEMBL::Web::Object::location_URL


mapview_link
Parameter $feature on a "real chromosome" then this is encapsulated in a link to mapview.Returns name of seq_region $feature is on. If the passed features is
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EnsEMBL::Web::Object::mapview_link


prefix
Accessor.
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EnsEMBL::Web::Object::prefix


seq_region_type_and_name
Returns the type/name of seq_region in human readable form - if the coord system type is part of the name this is dropped.
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EnsEMBL::Web::Object::seq_region_type_and_name


seq_region_type_human_readable
Returns the type of seq_region in "human readable form" (in this case just first letter captialised)
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EnsEMBL::Web::Object::seq_region_type_human_readable