EnsEMBL::Web::Tools::Registry

Location: /modules/EnsEMBL/Web/Tools/Registry.pm
Source code · Permalink

Inherits from:

No subclasses

Overview

Constructor

  • new (EnsEMBL::Web::Root)

Method

Unknown

  • _parse_referer (EnsEMBL::Web::Root)
  • filters (EnsEMBL::Web::Root)
  • help_feedback (EnsEMBL::Web::Root)
  • is_available (EnsEMBL::Web::Root)
  • new
Documentation coverage: 80 %

Methods

    _format_error
    Format an error message by wrapping text to 120 columns
    Inherited from EnsEMBL::Web::Root
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    configure
    Loads the adaptor into the registry from the self->{'conf'} definitionsReturns: none
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    de_romanize
    Converts a number from roman (IV...) format to number...
    Inherited from EnsEMBL::Web::Root
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    dynamic_use
    Equivalent of USE - but used at runtime
    Inherited from EnsEMBL::Web::Root
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    dynamic_use_failure
    Return error message cached if use previously failed!
    Inherited from EnsEMBL::Web::Root
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    evaluate_bp
    Reverse of round BP - takes a value with a K/M/G at the end and converts to integer value...
    Inherited from EnsEMBL::Web::Root
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    is_valid_module_name
    returns true if valid module name...
    Inherited from EnsEMBL::Web::Root
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    make_directory
    Creates a writeable directory - making sure all parents exist!
    Inherited from EnsEMBL::Web::Root
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    neat_sr_name
    Returns seq-region name formatted neatly...
    Inherited from EnsEMBL::Web::Root
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    new
    Constructor. Constructs the class - as its a base class contains nothing.!
    Inherited from EnsEMBL::Web::Root
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    not_allowed
    Loops through array of filters and returns the first one that fails
    Inherited from EnsEMBL::Web::Root
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    pretty_date
    Converts a MySQL datetime field into something human-readable
    Inherited from EnsEMBL::Web::Root
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    round_bp
    Returns #bp formatted neatly as either m/k
    Inherited from EnsEMBL::Web::Root
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    seq_region_sort
    Used to sort chromosomes into a sensible order!
    Inherited from EnsEMBL::Web::Root
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    temp_file_create
    Creates a temporary file name and makes sure its parent directory exists
    Inherited from EnsEMBL::Web::Root
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    temp_file_name
    Creates a random filename
    Inherited from EnsEMBL::Web::Root
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    templatize
    Takes a string, and a template pattern and returns the string with "/" from the template inserted...
    Inherited from EnsEMBL::Web::Root
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    thousandify
    Retuns comma separated version of number...
    Inherited from EnsEMBL::Web::Root
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    ticket
    Returns a random ticket string
    Inherited from EnsEMBL::Web::Root
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    url
    Assembles a valid URL, adding the site's base URL and CGI-escaping any parametersreturns a URL string
    Inherited from EnsEMBL::Web::Root
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