Inherits from:
No subclasses
Overview
Constructor
- new (EnsEMBL::Web::Root)
Method
- _format_error (EnsEMBL::Web::Root)
- configure
- de_romanize (EnsEMBL::Web::Root)
- dynamic_use (EnsEMBL::Web::Root)
- dynamic_use_failure (EnsEMBL::Web::Root)
- evaluate_bp (EnsEMBL::Web::Root)
- is_valid_module_name (EnsEMBL::Web::Root)
- make_directory (EnsEMBL::Web::Root)
- neat_sr_name (EnsEMBL::Web::Root)
- not_allowed (EnsEMBL::Web::Root)
- pretty_date (EnsEMBL::Web::Root)
- round_bp (EnsEMBL::Web::Root)
- seq_region_sort (EnsEMBL::Web::Root)
- temp_file_create (EnsEMBL::Web::Root)
- temp_file_name (EnsEMBL::Web::Root)
- templatize (EnsEMBL::Web::Root)
- thousandify (EnsEMBL::Web::Root)
- ticket (EnsEMBL::Web::Root)
- url (EnsEMBL::Web::Root)
Unknown
- _parse_referer (EnsEMBL::Web::Root)
- filters (EnsEMBL::Web::Root)
- help_feedback (EnsEMBL::Web::Root)
- is_available (EnsEMBL::Web::Root)
- new
Methods
- _format_error
Format an error message by wrapping text to 120 columns
Inherited from EnsEMBL::Web::Root
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configure
Loads the adaptor into the registry from the self->{'conf'} definitionsReturns: none
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de_romanize
Converts a number from roman (IV...) format to number...
Inherited from EnsEMBL::Web::Root
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dynamic_use
Equivalent of USE - but used at runtime
Inherited from EnsEMBL::Web::Root
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dynamic_use_failure
Return error message cached if use previously failed!
Inherited from EnsEMBL::Web::Root
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evaluate_bp
Reverse of round BP - takes a value with a K/M/G at the end and converts to integer value...
Inherited from EnsEMBL::Web::Root
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is_valid_module_name
returns true if valid module name...
Inherited from EnsEMBL::Web::Root
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make_directory
Creates a writeable directory - making sure all parents exist!
Inherited from EnsEMBL::Web::Root
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neat_sr_name
Returns seq-region name formatted neatly...
Inherited from EnsEMBL::Web::Root
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new
Constructor. Constructs the class - as its a base class contains nothing.!
Inherited from EnsEMBL::Web::Root
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not_allowed
Loops through array of filters and returns the first one that fails
Inherited from EnsEMBL::Web::Root
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pretty_date
Converts a MySQL datetime field into something human-readable
Inherited from EnsEMBL::Web::Root
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round_bp
Returns #bp formatted neatly as either m/k
Inherited from EnsEMBL::Web::Root
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seq_region_sort
Used to sort chromosomes into a sensible order!
Inherited from EnsEMBL::Web::Root
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temp_file_create
Creates a temporary file name and makes sure its parent directory exists
Inherited from EnsEMBL::Web::Root
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temp_file_name
Creates a random filename
Inherited from EnsEMBL::Web::Root
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templatize
Takes a string, and a template pattern and returns the string with "/" from the template inserted...
Inherited from EnsEMBL::Web::Root
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thousandify
Retuns comma separated version of number...
Inherited from EnsEMBL::Web::Root
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ticket
Returns a random ticket string
Inherited from EnsEMBL::Web::Root
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url
Assembles a valid URL, adding the site's base URL and CGI-escaping any parametersreturns a URL string
Inherited from EnsEMBL::Web::Root
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