EnsEMBL::Web::Component::Alignment

Location: /modules/EnsEMBL/Web/Component/Alignment.pm
Source code · Permalink

Inherits from:

No subclasses

Overview

Method

Unknown

  • HOMOLOGY_TYPES
  • SIMPLEALIGN_DEFAULT
  • SIMPLEALIGN_FORMATS
  • _attach_das (EnsEMBL::Web::Component)
  • _error (EnsEMBL::Web::Component)
  • _export (EnsEMBL::Web::Component)
  • _export_image (EnsEMBL::Web::Component)
  • _hint (EnsEMBL::Web::Component)
  • _info (EnsEMBL::Web::Component)
  • _info_panel (EnsEMBL::Web::Component)
  • _init (EnsEMBL::Web::Component)
  • _matches (EnsEMBL::Web::Component)
  • _sort_similarity_links (EnsEMBL::Web::Component)
  • _warning (EnsEMBL::Web::Component)
  • ajaxable (EnsEMBL::Web::Component)
  • build_sequence (EnsEMBL::Web::Component)
  • cache (EnsEMBL::Web::Component)
  • cache_key (EnsEMBL::Web::Component)
  • cache_print (EnsEMBL::Web::Component)
  • cacheable (EnsEMBL::Web::Component)
  • caption (EnsEMBL::Web::Component)
  • chunked_content (EnsEMBL::Web::Component)
  • configurable (EnsEMBL::Web::Component)
  • exon_information
  • external_information
  • format
  • format_form
  • get_sequence_data (EnsEMBL::Web::Component)
  • image_width (EnsEMBL::Web::Component)
  • markup_codons (EnsEMBL::Web::Component)
  • markup_comparisons (EnsEMBL::Web::Component)
  • markup_conservation (EnsEMBL::Web::Component)
  • markup_exons (EnsEMBL::Web::Component)
  • markup_line_numbers (EnsEMBL::Web::Component)
  • markup_variation (EnsEMBL::Web::Component)
  • modal_form (EnsEMBL::Web::Component)
  • new (EnsEMBL::Web::Component)
  • new_image (EnsEMBL::Web::Component)
  • new_karyotype_image (EnsEMBL::Web::Component)
  • new_vimage (EnsEMBL::Web::Component)
  • object (EnsEMBL::Web::Component)
  • output_AlignSlice
  • output_DnaDnaAlignFeature
  • output_External
  • output_External_exon_al
  • output_External_trans_al
  • output_Family
  • output_GeneTree
  • output_Homology
  • param_list
  • remove_redundant_xrefs (EnsEMBL::Web::Component)
  • renderer_type
  • site_name (EnsEMBL::Web::Component)
Documentation coverage: 2 %

Methods

    _warn_block
    Simple subroutine to dump a formatted "warn" block to the error logs - useful when debugging complex data structures etc... output looks like:



    # # # TEXT. TEXT. TEXT. TEXT. # # TEXT. TEXT. TEXT. TEXT. # # TEXT. TEXT. TEXT. TEXT. # # # # TEXT. TEXT. TEXT. TEXT. # # TEXT. TEXT. TEXT. TEXT. # # #




    Inherited from EnsEMBL::Web::Component
    View source