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ensembl-variation
ensembl-variation::C_code
ensembl-variation::documentation
ensembl-variation::modules
ensembl-variation::modules::Bio
ensembl-variation::modules::Bio::EnsEMBL
ensembl-variation::modules::Bio::EnsEMBL::Variation
ensembl-variation::modules::Bio::EnsEMBL::Variation::DBSQL
ensembl-variation::modules::Bio::EnsEMBL::Variation::Utils
ensembl-variation::modules::t
ensembl-variation::modules::t::test-genome-DBs
ensembl-variation::modules::t::test-genome-DBs::homo_sapiens
ensembl-variation::modules::t::test-genome-DBs::homo_sapiens::core
ensembl-variation::modules::t::test-genome-DBs::homo_sapiens::variation
ensembl-variation::schema
ensembl-variation::scripts
ensembl-variation::scripts::import
ensembl-variation::scripts::import::LRG
ensembl-variation::scripts::import::SARA
ensembl-variation::scripts::import::Sanger
ensembl-variation::scripts::import::Solexa
ensembl-variation::scripts::import::dbSNP
ensembl-variation::scripts::ssahaSNP
ensembl-variation::sql
ensembl-variationTop
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ensembl-variation::C_codeTop
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ensembl-variation::documentationTop
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ensembl-variation::modulesTop
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ensembl-variation::modules::BioTop
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ensembl-variation::modules::Bio::EnsEMBLTop
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ensembl-variation::modules::Bio::EnsEMBL::VariationTop
AlleleA single allele of a nucleotide variation.
AlleleFeatureA genomic position for an allele in a sample.
AlleleGroupEnsembl representation of a grouping of alleles (aka haplotype).
ConsequenceTypeBio::EnsEMBL::Variation::ConsequenceType
GenotypeAbstract base class representing a genotype
IndividualA single member of a population.
IndividualGenotypeModule representing the genotype of a single individual at a single position
IndividualGenotypeFeatureModule representing the genotype of a single individual at a single position
LDFeatureContainerA container with all the ld values for quick access
PopulationA population represents a phenotypic group, ethnic group, set of individuals used in an assay, etc.
PopulationGenotypeModule for a genotype represented in a population.
ReadCoverageA coverage reagion for a read.
ReadCoverageCollectionA collection of coverage reagion for a read.
SampleAn abstract base class to represent Population, Individual or Strain
TranscriptVariationBio::EnsEMBL::Variation::TranscriptVariation
VariationEnsembl representation of a nucleotide variation.
VariationAnnotationA genotype phenotype annotation for a nucleotide variation.
VariationFeatureA genomic position for a nucleotide variation.
VariationGroupEnsembl representation of a grouping of variations (aka haplotype set).
VariationGroupFeatureA genomic position for a variation group (aka haplotype block).
ensembl-variation::modules::Bio::EnsEMBL::Variation::DBSQLTop
AlleleFeatureAdaptorBio::EnsEMBL::Variation::DBSQL::AlleleFeatureAdaptor
AlleleGroupAdaptorBio::EnsEMBL::Variation::DBSQL::AlleleGroupAdaptor
BaseGenotypeAdaptorBio::EnsEMBL::Variation::DBSQL::BaseGenotypeAdaptor
CompressedGenotypeAdaptorBio::EnsEMBL::Variation::DBSQL::CompressedGenotypeAdaptor
DBAdaptorBio::EnsEMBL::DBSQL::DBAdaptor
IndividualAdaptorBio::EnsEMBL::DBSQL::IndividualAdaptor
IndividualGenotypeAdaptorBio::EnsEMBL::Variation::DBSQL::IndividualGenotypeAdaptor
LDFeatureContainerAdaptorBio::EnsEMBL::Variation::DBSQL::LDFeatureContainerAdaptor
MetaContainerEncapsulates all access to variation database meta information
PopulationAdaptorBio::EnsEMBL::Variation::DBSQL::PopulationAdaptor
PopulationGenotypeAdaptorBio::EnsEMBL::Variation::DBSQL::PopulationGenotypeAdaptor
ReadCoverageAdaptorBio::EnsEMBL::Variation::DBSQL::ReadCoverageAdaptor
ReadCoverageCollectionAdaptorBio::EnsEMBL::Variation::DBSQL::ReadCoverageCollectionAdaptor
SampleAdaptorBio::EnsEMBL::Variation::DBSQL::SampleAdaptor
TranscriptVariationAdaptorBio::EnsEMBL::Variation::DBSQL::TranscriptVariationAdaptor
VariationAdaptorBio::EnsEMBL::Variation::DBSQL::VariationAdaptor
VariationAnnotationAdaptorBio::EnsEMBL::Variation::DBSQL::VariationAnnotationAdaptor
VariationFeatureAdaptorBio::EnsEMBL::Variation::DBSQL::VariationFeatureAdaptor
VariationGroupAdaptorBio::EnsEMBL::Variation::DBSQL::VariationGroupAdaptor
VariationGroupFeatureAdaptorBio::EnsEMBL::Variation::DBSQL::VariationGroupFeatureAdaptor
ensembl-variation::modules::Bio::EnsEMBL::Variation::UtilsTop
SequenceUtility functions for sequences
ensembl-variation::modules::tTop
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ensembl-variation::modules::t::test-genome-DBsTop
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ensembl-variation::modules::t::test-genome-DBs::homo_sapiensTop
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ensembl-variation::modules::t::test-genome-DBs::homo_sapiens::coreTop
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ensembl-variation::modules::t::test-genome-DBs::homo_sapiens::variationTop
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ensembl-variation::schemaTop
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ensembl-variation::scriptsTop
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ensembl-variation::scripts::importTop
DBH
ImportUtils
ensembl-variation::scripts::import::LRGTop
LRG(1)
LRG(2)
Node
ensembl-variation::scripts::import::SARATop
GetSARA
ensembl-variation::scripts::import::SangerTop
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ensembl-variation::scripts::import::SolexaTop
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ensembl-variation::scripts::import::dbSNPTop
GenericChromosome
GenericContig
Human
MappingChromosome
Mosquito
ensembl-variation::scripts::ssahaSNPTop
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ensembl-variation::sqlTop