TOC for ensembl-analysis::modules::Bio::EnsEMBL::Analysis::Runnable
AlignmentChainsBio::EnsEMBL::Pipeline::Runnable::AlignmentChains
AlignmentNetsBio::EnsEMBL::Pipeline::Runnable::AlignmentNets
BaseAbInitio
BaseExonerateBio::EnsEMBL::Analysis::Runnable::ExonerateTranscript
BestPmatch
BestTargetted
BestTargettedExonerate
BlastBio::EnsEMBL::Analysis::Runnable::Blast
BlastMiniBuilderBio::EnsEMBL::Analysis::Runnable::BlastMiniBuilder;
BlastMiniGenewiseBio::EnsEMBL::Analysis::Runnable::BlastMiniGenewise
BlastRfamBio::EnsEMBL::Analysis::Runnable::BlastRfam
BlastTranscriptDNABio::EnsEMBL::Analysis::Runnable::BlastTranscriptDNA
BlastTranscriptPepBio::EnsEMBL::Analysis::Runnable::BlastTranscriptPep
BlastmiRNABio::EnsEMBL::Analysis::Runnable::BlastmiRNA
BlastzBio::EnsEMBL::Analysis::Runnable::Blastz
BlatBio::EnsEMBL::Analysis::Runnable::Blat
CPGBio::EnsEMBL::Analysis::Runnable::CPG
CrossMatch
DustBio::EnsEMBL::Analysis::Runnable::Dust
EPCRBio::EnsEMBL::Analysis::Runnable::EPCR
EponineTSSBio::EnsEMBL::Analysis::Runnable::EponineTSS
ExonerateAffyBio::EnsEMBL::Analysis::Runnable::ExonerateAffy
ExonerateAlignFeatureBio::EnsEMBL::Analysis::Runnable::ExonerateAlignFeature
ExonerateArrayBio::EnsEMBL::Pipeline::Runnable::ExonerateArray
ExonerateCloneEndsBio::EnsEMBL::Analysis::Runnable::ExonerateCloneEnds
ExonerateProbeBio::EnsEMBL::Analysis::Runnable::ExonerateProbe
ExonerateTagsBio::EnsEMBL::Analysis::Runnable::ExonerateTags
ExonerateTranscriptBio::EnsEMBL::Analysis::Runnable::ExonerateTranscript
FgeneshBio::EnsEMBL::Analysis::Runnable::Fgenes
FirstEFBio::EnsEMBL::Analysis::Runnable::FirstEF
FuncgenBio::EnsEMBL::Analysis::Runnable::Fungen
GeneBuilder
GenefinderBio::EnsEMBL::Analysis::Runnable::Genefinder
Genewisealigns protein hits to genomic sequence
GenscanBio::EnsEMBL::Analysis::Runnable::Genscan
HaplotypeMapperBio::EnsEMBL::Analysis::Runnable::HaplotypeProjection
HaplotypeProjectionBio::EnsEMBL::Analysis::Runnable::HaplotypeProjection
HavanaAdderBio::EnsEMBL::Analysis::Runnable::HavanaAdder
InfernalBio::EnsEMBL::Analysis::Runnable::Infernal
LaganBio::EnsEMBL::Analysis::Runnable::Mlagan
LowCoverageGenomeAlignmentBio::EnsEMBL::Analysis::Runnable::LowCoverageGenomeAlignment
MavidBio::EnsEMBL::Analysis::Runnable::Mavid
MercatorBio::EnsEMBL::Analysis::Runnable::Mercator
MiniGenewiseBio::EnsEMBL::Analysis::Runnable::MiniGenewise
MlaganBio::EnsEMBL::Analysis::Runnable::Mlagan
MultiMiniGenewiseBio::EnsEMBL::Analysis::Runnable::MultiMiniGenewise
OrtheusBio::EnsEMBL::Analysis::Runnable::Ortheus
PSILCBio::EnsEMBL::Analysis::Runnable::PSILC;
PSILC_BlastPBio::EnsEMBL::Analysis::Runnable::PSILC;
PecanBio::EnsEMBL::Analysis::Runnable::Mlagan
Pmatch
ProteinAnnotation
PseudogeneBio::EnsEMBL::Analysis::Runnable::Pseudogene
Pseudogene2xof Pseudogene calling code for 2x genomes
RNAFoldBio::EnsEMBL::Analysis::Runnable::RNAfold
RepeatMaskerBio::EnsEMBL::Analysis::Runnable::RepeatMasker
SnapBio::EnsEMBL::Analysis::Runnable::Snap
Spliced_elsewhereBio::EnsEMBL::Analysis::Runnable::Spliced_elsewhere;
TRFBio::EnsEMBL::Analysis::Runnable::TRF
TranscriptCoalescer
TranscriptConsensus
miRNABio::EnsEMBL::Analysis::Runnable:miRNA
tRNAscan_SEBio::EnsEMBL::Analysis::Runnable::tRNAscan_SE