| ensembl-external | Top |
Nothing here |
| ensembl-external::family | Top |
Nothing here |
| ensembl-external::family::bin | Top |
Nothing here |
| ensembl-external::family::modules | Top |
Nothing here |
| ensembl-external::family::modules::Algorithm | Top |
| Diff | Compute `intelligent' differences between two files / lists |
| DiffOld | Compute `intelligent' differences between two files / lists but use the old (<=0.59) interface. |
| ensembl-external::family::scripts | Top |
Nothing here |
| ensembl-external::family::src | Top |
Nothing here |
| ensembl-external::family::src::markov | Top |
Nothing here |
| ensembl-external::modules | Top |
Nothing here |
| ensembl-external::modules::Bio | Top |
| DBLinkContainerI | Abstract interface for any object wanting to use database cross references |
| ensembl-external::modules::Bio::EnsEMBL | Top |
Nothing here |
| ensembl-external::modules::Bio::EnsEMBL::ExternalData | Top |
| BaseAdaptor | Base Adaptor for DBSQL adaptors |
| CodingSNP | DESCRIPTION of Object |
| Frequency | create Frequency object for subSNP population |
| GeneSNP | class to expand genomic SNP into full gene variation description |
| Population | create Population object for subSNP frequencies |
| Variation | Variation SeqFeature |
| ensembl-external::modules::Bio::EnsEMBL::ExternalData::CDSTrack | Top |
| Accession(1) | |
| Ccds | |
| CcdsStatus | |
| GroupVersion | |
| Interpretation | |
| Location(1) |
| ensembl-external::modules::Bio::EnsEMBL::ExternalData::CDSTrack::DBSQL | Top |
| AccessionAdaptor(1) | |
| CcdsAdaptor | |
| CcdsStatusAdaptor | |
| DBAdaptor(1) | Bio::EnsEMBL::ExternalData::CDSTrack::DBSQL::DBAdaptor |
| GroupVersionAdaptor | |
| InterpretationAdaptor | |
| LocationAdaptor(1) |
| ensembl-external::modules::Bio::EnsEMBL::ExternalData::CancerGenomeProject | Top |
Nothing here |
| ensembl-external::modules::Bio::EnsEMBL::ExternalData::CancerGenomeProject::SQL | Top |
| DBAdaptor(2) | Class for a sequence variation database providing external features for EnsEMBL |
| LocusAdaptor | Bio::EnsEMBL::ExternalData::CancerGenomeProject::DBSQL::LocusAdaptor |
| ensembl-external::modules::Bio::EnsEMBL::ExternalData::DAS | Top |
| CoordSystem | |
| Coordinator | Bio::EnsEMBL::ExternalData::DAS::Coordinator |
| Feature | Bio::EnsEMBL::ExternalData::DAS::Feature |
| FeatureGroup | Bio::EnsEMBL::ExternalData::DAS::FeatureGroup |
| GenomicMapper | |
| GenomicPeptideMapper | |
| Source | Bio::EnsEMBL::ExternalData::DAS::Source |
| SourceParser | Bio::EnsEMBL::ExternalData::DAS::SourceParser |
| Stylesheet | Bio::EnsEMBL::ExternalData::DAS::Stylesheet |
| XrefPeptideMapper |
| ensembl-external::modules::Bio::EnsEMBL::ExternalData::Disease | Top |
| DBHandler | Bio::EnsEMBL::ExternalData::Disease::DBHandler |
| Disease | Bio::EnsEMBL::ExternalData::Disease::Disease |
| DiseaseLocation | Bio::EnsEMBL::ExternalData::Disease::Disease |
| ensembl-external::modules::Bio::EnsEMBL::ExternalData::Expression | Top |
| Library | Bio::EnsEMBL::ExternalData::Expression::Library |
| LibraryAdaptor | Bio::EnsEMBL::ExternalData::Expression::LibraryAdaptor |
| SeqTag | Bio::EnsEMBL::ExternalData::Expression::SeqTag |
| SeqTagAdaptor | Bio::EnsEMBL::ExternalData::Expression::SeqTagAdaptor |
| ensembl-external::modules::Bio::EnsEMBL::ExternalData::Expression::scripts | Top |
Nothing here |
| ensembl-external::modules::Bio::EnsEMBL::ExternalData::Expression::scripts::mapping_scripts | Top |
Nothing here |
| ensembl-external::modules::Bio::EnsEMBL::ExternalData::Expression::sql | Top |
Nothing here |
| ensembl-external::modules::Bio::EnsEMBL::ExternalData::FASTA | Top |
| FASTAAdaptor | DESCRIPTION of Object This object represents a database of fasta sequences. |
| ensembl-external::modules::Bio::EnsEMBL::ExternalData::Family | Top |
| Family | DESCRIPTION of Object |
| FamilyConf | Bio::Pipeline::FamilyConf |
| FamilyMember | DESCRIPTION of Object |
| GenomeDB | Bio::EnsEMBL::ExternalData::Family::GenomeDB |
| Taxon | DESCRIPTION of Object |
| ensembl-external::modules::Bio::EnsEMBL::ExternalData::Family::DBSQL | Top |
| DBAdaptor(3) | |
| FamilyAdaptor | DESCRIPTION of Object This object represents a family coming from a database of protein families. |
| FamilyMemberAdaptor | DESCRIPTION of Object This object represents a database of protein families. |
| GenomeDBAdaptor | Bio::EnsEMBL::Compara::DBSQL::GenomeDBAdaptor |
| TaxonAdaptor | DESCRIPTION of Object |
| ensembl-external::modules::Bio::EnsEMBL::ExternalData::GO | Top |
| GOAdaptor | DESCRIPTION of Object GO database interface. |
| ensembl-external::modules::Bio::EnsEMBL::ExternalData::Glovar | Top |
| BaseComposition | This object represents the base composition as provided by Glovar |
| DBAdaptor(4) | Database adaptor for a Glovar database |
| DBConnection(1) | Database connection object for a Glovar database |
| GlovarAdaptor | DESCRIPTION of Object This object represents the Glovar database. |
| GlovarBaseCompAdaptor | Object adaptor for Glovar base composition |
| GlovarHaplotypeAdaptor | Database adaptor for Glovar haplotypes |
| GlovarSNPAdaptor | Object adaptor for Glovar SNPs |
| GlovarSTSAdaptor | Database adaptor for Glovar STSs |
| GlovarTraceAdaptor | Database adaptor for Glovar traces |
| Haplotype(1) | Object representing a Glovar haplotype |
| STS | Object representing a Glovar STS |
| ensembl-external::modules::Bio::EnsEMBL::ExternalData::Haplotype | Top |
| DBAdaptor(5) | |
| Haplotype(2) | DESCRIPTION of Object This object represents a database of haplotypes. |
| HaplotypeAdaptor | DESCRIPTION of Object This object represents a database of haplotypes. |
| Pattern | DESCRIPTION of Object This object represents a database of haplotype patterns. |
| Select | Select htSNP from a haplotype set |
| Tag | Haplotype tag object. |
| ensembl-external::modules::Bio::EnsEMBL::ExternalData::Mole | Top |
| Accession(2) | |
| BlackList | |
| Comment | |
| DBXref | |
| Description | |
| Entry | |
| GeneName | |
| Keyword | |
| Location(2) | |
| Sequence | |
| Taxonomy |
| ensembl-external::modules::Bio::EnsEMBL::ExternalData::Mole::DBSQL | Top |
| AccessionAdaptor(2) | |
| BlackListAdaptor | |
| CommentAdaptor | |
| DBAdaptor(6) | Bio::EnsEMBL::ExternalData::Mole::DBSQL::DBAdaptor |
| DBXrefAdaptor | |
| DescriptionAdaptor | |
| EntryAdaptor | |
| GeneNameAdaptor | |
| KeywordAdaptor | |
| LocationAdaptor(2) | |
| SequenceAdaptor | |
| TaxonomyAdaptor |
| ensembl-external::modules::Bio::EnsEMBL::ExternalData::SNPSQL | Top |
| DBAdaptor(7) | Class for a sequence variation database providing external features for EnsEMBL |
| SNPAdaptor | Bio::EnsEMBL::ExternalData::SNPSQL::SNPAdaptor |
| WebAdaptor | Web accelerated (light objects) for SNPs |
| ensembl-external::modules::Bio::EnsEMBL::ExternalData::SangerSNP | Top |
| DBAdaptor(8) | Database adaptor for a SangerSNP database |
| DBConnection(2) | Database connection object for a SangerSNP database |
| TranscriptVariationAdaptor | Bio::EnsEMBL::ExternalData::SangerSNP::TranscriptVariationAdaptor |
| VariationAdaptor | Bio::EnsEMBL::ExternalData::SangerSNP::VariationAdaptor |
| ensembl-external::modules::t | Top |
| EnsTestDB |
| ensembl-external::scripts | Top |
Nothing here |
| ensembl-external::scripts::family | Top |
Nothing here |
| ensembl-external::sql | Top |