All Perl modules
Algorithms
AlignSlice
AlignSliceAdaptor
AlignedMember
AlignmentChains
AlignmentNets
AlignmentProcessing
AnchorAlign
AnchorAlignAdaptor
AnchorAlignAdaptor
AnchorSeqAdaptor
AnchorSeqAdaptor
Attribute
AttributeAdaptor
BaseRelation
BaseRelationAdaptor
BestHit
BlastComparaPep
BlastComparaPepAcross
BlastZ
Blat
BreakPAFCluster
BuildHomology
CGObject
ChunkAndGroupDna
ClustalW
ConnectedComponentGraphs
ConnectedComponents
ConservationScore
ConservationScoreAdaptor
ConstrainedElement
ConstrainedElementAdaptor
CreateAlignmentChainsJobs
CreateAlignmentNetsJobs
CreateBlastRules
CreateBuildHomologyJobs
CreateFilterDuplicatesJobs
CreateHclusterPrepareJobs
CreateHomology_dNdSJobs
CreateLowCoverageJobs
CreatePairAlignerJobs
CreateRules
CreateSimpleNetsJobs
DBAdaptor
DBAdaptor
Diff
DnaAlignFeatureAdaptor
DnaCollection
DnaCollectionAdaptor
DnaFrag
DnaFragAdaptor
DnaFragChunk
DnaFragChunkAdaptor
DnaFragChunkSet
DnaFragChunkSetAdaptor
DnaFragRegion
DnaFragRegionAdaptor
Domain
DomainAdaptor
Dummy
DumpDnaCollection
DumpLargeNibForChains
Exon
ExonerateAnchors
Family
FamilyAdaptor
FilterAnchors
FilterDuplicates
FilterStack
GeneSet
GenomeCalcStats
GenomeDB
GenomeDBAdaptor
GenomeDumpFasta
GenomeLoadExonMembers
GenomeLoadMembers
GenomeSubmitPep
GenomicAlign
GenomicAlignAdaptor
GenomicAlignBlock
GenomicAlignBlockAdaptor
GenomicAlignGroup
GenomicAlignGroupAdaptor
GenomicAlignTree
GenomicAlignTreeAdaptor
Gerp
GetBlastzOverlaps
Greedy
HclusterPrepare
HclusterRun
HealthCheck
Homology
HomologyAdaptor
HomologyCluster
HomologySet
Homology_dNdS
ImportAlignment
Lagan
Link
LoadUniProt
LowCoverageGenomeAlignment
MCoffee
Mavid
Member
MemberAdaptor
Mercator
MethodLinkSpeciesSet
MethodLinkSpeciesSetAdaptor
Mlagan
Muscle
NCBITaxon
NCBITaxonAdaptor
NJTREE_PHYML
NestedSet
NestedSetAdaptor
NewickParser
Node
Ortheus
OrthoTree
PAFCluster
PHYML
PairAligner
Pecan
PeptideAlignFeature
PeptideAlignFeatureAdaptor
PhastCons
ProteinTree
ProteinTreeAdaptor
QuickTreeBreak
RAP
RemoveAnchorOverlaps
SequenceAdaptor
SimpleNets
SitewiseOmega
SitewiseOmegaAdaptor
Sitewise_dNdS
Slice
Subset
SubsetAdaptor
SyntenyRegion
SyntenyRegionAdaptor
Taxon
TaxonAdaptor
Threshold_on_dS
Translation
TrimAnchorAlign
TrimStoreAnchors
UpdateMaxAlignmentLength
UpdatePAFIds
compara
conservation_score